Sunday, December 29, 2013

The Amazing Social Amoeba!

Multicellularity is an astonishing feat of communal sacrifice. With the exception of sperm and egg (the "germ line" cells), the 40 trillion cells currently in your body will dutifully perform their particular charge to maintain the whole, intricately arranging themselves to form your arteries, lungs, liver and brain, without ever having a chance to meaningfully reproduce. Many will die on command like fascist soldiers in a bad sci-fi movie. Even for the Genghis Khans of the world, a vanishingly small minority of the cells in the body produce descendants that outlive the individual of which they are a part. The primary imperative of life on earth is to reproduce (save for humans), yet multicellularity seems like a coordinated renunciation of that mission. Cells instead opt to specialize and curtail their reproductive potential (except for cancer cells) in favor of becoming part of something larger. Despite its seeming improbability, multicellularity has evolved dozens of times in the history of Earth, in both familiar and strange branches on the tree of life. 


Picture: Phylogeny Friday
Animals and Fungi are two of the more familiar multicellular lineages and are both members of a group called the "Unikonts." Indeed, fungi (like mushrooms, brewer's yeast, and athlete's foot) are much more closely related to animals than to plants. Amoebae, the microscopic, one-celled blob-looking organisms, are fellow unikonts, though more distantly related to animals than are fungi. One lineage called "social amoebae," or cellular slime molds (Dictyosteliids), conduct their lives in a bizarre twilight zone between the unicellular and multicellular. Social amoebae scavenge for bacteria as single cells, roaming in forest soils. But when times get tough, they aggregate together and form a visible, multicellular being called a "slug" or grex, about 3 millimeters long. This "slug" then migrates to more bountiful scavenging grounds, where it forms a fruiting body (sorus) on top of a stalk and ejects amoeba spores (kind of like a mushroom). Here are some videos:






These organisms have much to teach us about how multicellularity evolved and under what conditions. Not surprisingly, some of the genes and pathways social amoebae use to guide the formation of the "slug" differ from those used in animals and fungi. However, some aspects of cellular communication and development are similar across these three groups. As (distant) relatives of animals and fungi, social amoeba inherited many of the same genes from our common ancestor. In frogs, humans, and mushrooms, variants of these genes encode molecular signals that cells use to communicate and direct the proper development and growth of multicellular bodies. In social amoebae, they regulate the formation of the "slug."

Like other multicellular organisms, social amoebae exhibit self-sacrifice. The cells that make up the stalk of the fruiting body become rigid enough to hold the amoebae on top of them, and in the process die. This feature of "slug" behavior is of intense interest to those studying the evolution of multicellularity, and of the biological "altruism" that makes it work. The traditional explanation for the evolutionary advantage of altruism hangs on relatedness. You share roughly 50% of your genetic material with each sibling; if you die saving your sister from a burning building, she may live to pass on "your" genes to her offspring. Such is the cold, cruel logic behind the famous (in some circles) J.B.S Haldane quip "I will jump into the river to save two brothers or eight cousins." The same logic underlies ant and bee colonies where sterile workers serve their mother queen, and the behavior of cells in multicellular organisms. A kidney or skin cell waives its reproductive abilities in favor of the sperm or egg, which shares 100% of its genetic material.

Photo: Rodrigue Hamende
Indeed, social amoebae form "slugs" with their close relatives, and this helps curtail the spread of "cheaters" in their ranks. "Cheaters" reproduce rampantly, or suck resources from the whole without contributing their share; these cells are the rough equivalent of cancer cells in humans. The important difference is that social amoebae are fully capable of producing viable offspring that reproduce indefinitely. With the bizarre exceptions of transmissable tumors in Tasmanian Devils and dogs, cancer cells in animals are ultimately doomed to go down with the ship; they have no means to continue their spread following the death of the individual from whence they came. This difference means that natural selection acts against alleles (genetic variants) that increase cancer risk in animals, since these alleles cannot be passed on beyond the proliferation of the cancer. But cheater alleles in social amoebae could be selected for, if the free-loaders can jump off the "slug" and reproduce on their own. However, "slugs" can discriminate kin from strangers, and aggregate with their relatives, who are more likely to share their altruistic alleles. "Slugs" with a high proportion of cheaters are likely to fail, so those alleles won't be passed on.

Social amoebae are not a "missing link" between single- and multi-celled organisms; they are not our grandmothers but rather our distant cousins, and they have been an evolutionary success in their own right. There is no good reason to think they are evolving to become fully multicellular. However, the configuration of their life cycle, straddling the divide between single- and multicellularity, allows us to investigate the mechanisms and circumstances driving cellular communication and cooperation. We can see in them an alternate version of the rulebook by which we are built.

Friday, December 13, 2013

Monitoring Movements of Mysterious Marine Megafauna

I wonder about the ocean.

The smell of a salty breeze, the curios washed ashore, the miniature worlds in tide pools, the rolling expanse of waves - I instantly revert into a 6-year-old with a bucket and a net. That's just as well, because childish curiosity is probably the most appropriate response to the epic vastness and depth of the sea. Fantastical alien worlds lie just under the surface, out of reach. What is going on in there?



beep boop
Photo: nasa.gov
Centuries of dedicated scientific inquiry have yielded boatloads (sorry) of information about the flora and fauna of the ocean. Just as on land, scientists have used a variety of tools to chip away at a wall of questions about the ecology, life cycles, distribution and evolution of the menagerie of life in the ocean. As our analytical techniques and technological toolset grew, we were able to address old questions and discover new phenomena that hadn't even occurred to us. A system of satellitesbuoys, and drifters was employed to precisely map oceanic currents, a dream to Magellan and Drake. The accidental spill of 28,000 rubber ducks from a container ship in 1992 also helped. As knowledge expanded, we encountered new phenomena we had never anticipated, generating still more questions. Piloting the deep sea submarine "Alvin," Robert Ballard found whole complex ecosystems at the hydrothermal vents on the ocean floor that we had never imagined." These ecosystems derive their energy not from the sun, but from sulfides belched into the ocean from deep in the earth.


Party down here
Photo: http://serc.carleton.edu
One of the particularly frustrating remaining mysteries of the ocean is where large animals (megafauna) go and what they do. Sharks, whales, seals and turtles break the surface here and there for a short while and then slip back under the waves just as mysteriously, leaving us wondering where they were going and why. Are the

Great White Sharks seen off the coast of Cape Cod in August the same individuals seen around Florida? Where do hammerhead sharks go when they're not cruising around reefs? Why are whale shark feeding congregations 70% male - where are the females? These animals are some of the most majestic and awe-inspiring in the world, and we have no idea what they're doing most of the time.



Where the ladies at?
Photo: oceana.org
Satellite tracking studies, in which small devices loaded with sensors are attached to these animals, have done much to fill in the gaps in recent years. A lot of this information is helpfully compiled at http://www.topp.org/, and through it we have learned a great deal about the lives and migrations of marine megafauna. Whale shark feeding congregations are largely male because females are likely at sea-mount nurseries off in the open ocean, where there are fewer predators. Great Hammerhead sharks similarly migrate out to particular points in the middle of the ocean, outside of their previously-known range, and into international waters where the protections on hunting them can't be enforced. These sharks migrate in astonishingly straight lines, leading to hypotheses that these sharks navigate using the magnetic signatures of the earth, a mechanism called "geomagnetic topotaxis." Great White Sharks also travel huge distances, but take more meandering courses.

Satellite tracking studies shine a light on previously unknowable aspects of some of the most impressive animals on Earth. We're slowly building an idea of where and why they congregate, and how they navigate the ocean. As knowledge is uncovered, new questions arise; what kind of sensory systems allow to hammerheads to sense magnetic fields? As with all science, we build new tools and use them to answer old questions, and in the process stumble upon the unexpected. Inevitably, in exploring the shrouded corners of the world, we discover the depths of our own ignorance.